Ash O'Farrell
Ash O'Farrell
Someone reported on an old issue that volcano.conf does not work. I can't test that myself; just making a new ticket so this reported issue doesn't get lost in the...
If a WDL task generates a file with a space in its name, and that file is an output, Cromwell fumbles the outputs and throws an error (at least on...
Validating a workflow with circular imports causes a stack overflow in womtool. ## Expected behavior I'm the fool who wrote a workflow with circular imports, but if womtool is here...
I set up a heavily scattered (~1000x) workflow to run overnight on my local machine (Mac OS Catalina, Intel hardware). The machine is set up to never sleep and was...
[The WDL spec](https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md#parameter-metadata-section) notes that although `parameter_meta` is optional, any keys that it does have must correspond to a task input or output. `miniwdl check` does not enforce this, so...
### Current Behavior While attempting to view a small tree in radial view, the radial tree never loads, even though the tree is small and it works fine in rectangular...
**Is your feature request related to a problem? Please describe.** FAIR principles aren't changing anytime soon, but perhaps our interpretation of them should. **Food for thought** * Update recommendations that...
**Is your feature request related to a problem? Please describe.** https://github.com/DataBiosphere/analysis_pipeline_WDL has multiple workflows which are beautifully handled by a .dockstore.yml (seriously, it makes testing new commits with Terra so...
**Is your feature request related to a problem? Please describe.** Some of our legacy registration methods are easier to set up than registration with the GH App, in part because...
**Is your feature request related to a problem? Please describe.** I wanted to show a colleague line 20 of tasks/task_qc_utils.wdl from [this workflow](https://dockstore.org/workflows/github.com/theiagen/pshouublic_health_viral_genomics/Titan_ClearLabs:main?tab=files) to use it as a "maybe this...