LRBinner

LRBinner copied to clipboard

test / example data no longer available (dead link)

3

The test / example data linked in the readme.md isn't available anymore.

travc

Hmmer released a new version such that your build script is failing. The `build.sh` at https://github.com/anuradhawick/LRBinner/blob/a5c3a1faba20e908fe888d636942fbccf914448f/build.sh#L14 is not dynamic s.t. it does not track updates. Once I changed everything to...

Krannich479

Contigs binning -marker genes/hmmout problem

6

Hi @anuradhawick, I am running LRBinner for ONT contigs generated from metaFlye. I would like to bin the contigs and come across this tool for binning of long reads data,...

Nafson194

Hi, I have been trying to run LRBinner on a metagenomics dataset from ONT reads. I first run it just for the reads and it worked perfectly. However, when I...

pabloati

error with separate_reads.py

2

Hi I used contigs mode o bin the metagenomes (long-reads). Then I am trying to run the separate_reads.py and I am getting the following error: ``` Traceback (most recent call...

thulasis

Computing Contig Length Error

7

Hi @anuradhawick Sorry to keep inundating you with issues. I'm tying to bin contigs that I have assembled from ONT data using metaFlye but I am running into the following...

cazzlewazzle89

running on frameshift corrected contigs

1

Hi! I'm working with metagenomics data, I have both long and short reads (single end) at my disposal, and before finding your tool my plan was assembling (with metaflye) and...

chiaramazzoni

"Clustering using HDBSCAN running" step dows not complete

7

Hi @anuradhawick! We managed to launch LRBinner in docker, but the "Clustering using HDBSCAN running" step ended with the following mistake. docker run --rm -it --gpus '"device=3"' -v `pwd`:`pwd` -u...

crastr