Anton Kulaga

I am having issues with the regular CellProfiler. Maybe you can make at least a conda-package for it, because your pip is half-broken in terms of dependencies. I kind of...

I double on that. If the input bam is sorted the output of gencore should also be sorted, otherwise I will have to sort it again that will kill any...

@sfchen I've just checked the doc, in the docs you actually say "gencore accepts a sorted BAM/SAM with its corresponding reference fasta as input, and outputs an unsorted BAM/SAM." So,...

@zhujiaqi2014 I am actually using it for germline calling and runtime seems good for me. Do you have anything against germline usecase?

Maybe we can have two chrome plugins - basic one and a fancy one (with sbtweb, scalacss and scalatags)?

I already have it in my UI ( https://github.com/antonkulaga/kappa-notebook ), I will deploy it soon.

I noticed that this bug was fixed in @taquangtrung 's branch.

Still problem in Eclipse Mars

Any news on type hints? It is a super-useful feature for people like me who want to check generic collections with static types.

I personally run beartype, it does good job of checking types in the runtime. Maybe you can just use beartype-d functions in the test and check if they crash? I...