Anton Kulaga

Spark 2.20. I run move to 2.11 and move to spark.2 scripts before running Mango. I run spark locally. I wish I got at least some output from scripts (even...

Have not checked for Spark 2.1.x but latest master of ADAM works pretty well with Spark 2.2.0 for me (I use latest ADAM's master a lot right now). Anyway, even...

I managed to make it work by allowing to process in unsorted order. Regarding the index, I do not remember that vep had a parameter for the index file.

>do your bam/cram files have read-groups? >it could also be that there is no output and so svtyper can't find the read-groups but looks like you might not have read-groups...

I have the same problem when making ammonite docker container

By the way, have you considered integrating ScalaJS? There are already projects that let edit ScalaJS in the browser like http://www.scala-js-fiddle.com/

In the same time I think that issue about moving to scala 2.10 and sbt 0.13 is more important than issue about fixing this bug=)

Old scala 2.9x does not work with Java8 So the only way to make it work with JDK8 is to use Scala 2.10 and sbt 0.13 (as sbt 0.12 uses...

Guys, you claim " Mashmap can map a human genome assembly to the human reference genome in about one minute total execution time and < 4 GB memory using just...

There are instructions for cellprofiler, where are instructions for cellprofiler analyst?