Anton Bushuiev

This pull request fixes one bug and adds two minor extensions of the current functionality: 1. **Fix output file names collision.** If you currently run `match_pairs.py` on [`scannet_test_pairs_with_gt.txt`](scannet_test_pairs_with_gt.txt) you get...

Source code for DIPS split

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Hi 👋! In the paper it is mentioned: "For DIPS, the split is based on protein family to separate similar proteins". Is there a source code for this split? I...

[Variant effect prediction] Fix CPU inference

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Currently, variant effects prediction on CPU still requires CUDA operations. The PR fixes this.

Related to **Model/Framework(s)** * *SE(3)-Transformer* **Describe the bug** I train SE(3)-Transformer to predict type-0 node embeddings. I notice that with multiple training hyper-parameter setups I get the same following error:...

Evaluation

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Hi, @luost26! Great work! I have a question regarding the evaluation. I am comparing the evaluation of RDE-Net and RDE-Linear. Why are there fewer entries in the case of RDE-Linear?...