Leo Lahti

If we go with mia then I am OK with either solution. One generic function would be nice but if this is not possible, then specific functions. Another solution could...

Would be great if you can check the other functions / R files for the same issue on the same go!

Could we close this already?

A data.frame would be best I think, too. We can prepare PR later. We could start prioritizing issues because there are too many PRs to do at the same time.

I am ok with this at least. It is just useful to have 1) easy way to pick up dominant or "top" taxa (various criteria could be possible, considering abundance...

Seems good to me at least for now. We can later add more if this turns out to be necessary. In principle, the summary could also summarize taxa & metadata...

Yes I think it is ok to do this way.

Ok to me for now. Good to move forward.

@microsud any change to have a look before October release?

Right, there has been good progress. There are several points that I now picked from the above discussion that are not there. I think it would be good to make...