Leo Lahti

Seems best to go with an option that utilizes getCrossAssociation internally. The crossAssociation solution could have use for correlating reducedDims not just to assay features but also to colData. That...

Hmm, there shouldn't be a need to calculate correlations for the *rigorous* option (PCA and PCoA)? We can work through an example but essentially, we can dig out variable loadings...

@ElySeraidarian can you close as this becomes solved?

There could be a dedicated chapter on visualization, collecting key tricks in one place. Also: we can actively cite the other resources and avoid too much duplication in examples. While...

To do.

@Daenarys8 can you check if we have this already in OMA and this issue could be closed?

@Daenarys8 up

However, before implementing, let us consider the available options carefully. Bioconductor has its own [workshop.bioconductor.org](http://workshop.bioconductor.org/), where we could potentially add a section for us for students to launch personal RStudio...

Could you for instance browse through all reference pages in mia, miaViz, miaTime and see if you notice anything that could be easily improved / clarified? If examples throw warnings...

Status of this one @Daenarys8 ?