Clean up the manpages

[antagomir]

The html manpages do not always render well, see e.g. https://microbiome.github.io/mia/reference/getExperimentCrossAssociation.html

[Daenarys8]

Do we have pending tasks to clean up rendering in manpages?

[antagomir]

Could you for instance browse through all reference pages in mia, miaViz, miaTime and see if you notice anything that could be easily improved / clarified?

If examples throw warnings it might be good to either modify the example to get rid of warnings, or comment on why those warnings appear and show how to deal with them.

This task is secondary priority if more urgent tasks pop up.

[Daenarys8]

Sure will take a look while pending feedback on some commits I pushed earlier.

[antagomir]

Status of this one @Daenarys8 ?

[Daenarys8]

mia and miaViz are addressed in #603 and https://github.com/microbiome/miaViz/pull/140 respectively. Will add a PR for miaTime.

[antagomir]

Ok can we close this one or better to keep open still?

[Daenarys8]

I think we can close.

[antagomir]

Great. Please actively close all issues as they become ready.