ankushreddy

hi @JoeriHermans can you please look at this and let me know if am missing anything. Am trying to achieve it for the past two weeks. Thank You for your...

Hi @mahmoudparsian this is the logs. Log Type: directory.info Log Upload Time: Fri May 05 06:03:26 +0000 2017 Log Length: 5492 ls -l: total 36 lrwxrwxrwx 1 yarn hadoop 95...

Am getting the above error message alone. I have about 10 to 20 classes on which am using in the application. it will basically pull the data from an api...

@JackDavidson hi did you copy the jar files to worker nodes? our existing spark application or the command that we are running might not run on the head node itself....

@JackDavidson in our case we included all the dependencies along with the jar so we didn't face any issues with missing dependencies. I would suggest you to look at livy...

Hi @arahuja did you find any fix for this? I found that similar issue was with GATK. Please find the links for reference. http://gatkforums.broadinstitute.org/gatk/discussion/3579 http://gatkforums.broadinstitute.org/gatk/discussion/3693/another-gatk-unified-genotyper-null-alleles-are-not-supported please let me know if...

Hi @arahuja Thanks for the reply am using germline-threshold. Is there any workaround for this. We were actually testing avocado as well but we see it is actually calling 10...

**Hi @arahuja Thanks for the quick reply I just got few more questions am actually new to genomics. So don't know what exactly is going on with the code.** **I...

I am adam latest version just now I cloned it from git and started using it. when we use transform in adam submit it will adam format or something parquet...

@ryan-williams hi ryan thanks for guiding me I used adam 0.18.1 am getting null pointer exception. please find the LOG. 16/01/28 20:05:38 INFO MemoryStore: ensureFreeSpace(303352) called with curMem=0, maxMem=5556991426 16/01/28...