angelluigi

HI, Im trying executing this code. But i have received this problem. megalodon fast5_pass/ --guppy-server-path ./ont-guppy/bin/guppy_basecall_server --guppy-params "-d ./rerio/basecall_models/" --guppy-config res_dna_r941_min_modbases_5mC_v001.cfg --processes 40 --overwrite [15:56:06] Running Megalodon version 2.5.0 [15:56:06]...

Criteria for deciding whether a position is methylated

4

Hi, [doubt.xlsx](https://github.com/user-attachments/files/16109294/doubt.xlsx) I was analysing the data obtained using nanapore. I am looking for methylations in specific areas of the genome (6mA). I have used modkit, here is my code:...

Strand count asymmetry in modkit motif compared to find-motifs

2

Hi, I’ve observed a possible inconsistency between modkit motif and modkit find-motifs regarding how strand orientation is handled. When using find-motifs, the motif counts correctly reflect the total number of...