Andrew J. Rech

Hyperterm support

2

Would you consider adding support for the flashy new https://github.com/zeit/hyperterm? Thanks!

Improve obs_to_matrix with data.table

6

Replace reshape2::dcast with data.table::dcast for speed gain and to avoid issue with long sample names causing vector return error in reshape2 but not data.table: Using reshape2: ``` obs_counts

Unstated namespace dependency on data.table::head

11

https://github.com/pachterlab/sleuth/blob/2cbb28749875eaf7dcafb30f9a795313c481fcb1/R/sleuth.R#L800 > Error: package or namespace load failed for ‘immune.ml’: > object 'head' not found whilst loading namespace 'sleuth' > Execution halted > * checking whether the namespace can be...

Update wiki build insturctions

1

Build instructions on http://genome.sph.umich.edu/wiki/BamUtil vs GitHub are different.