Andrew Kern

okay neat. many of the structured coalescent models are time inhomogenous, e.g. a beneficial allele arises at some point, structuring the population past that point forward in time), so the...

good question @hyanwong -- I wonder how many sites multiallelic sites the AnoGam model produces. We know from the empirical Ag1kg data that ~1/3 of sites are multiallelic, but we...

yeah good question. i'll defer to @stsmall on this as he has his hands on the data right now.

yes you need more than one sample to run this software

ugh that's not great... how did you install?

what happens if you install using `pip install .`? be sure to be using a tensorflow version thats

how much memory are you using?

hi @willright28 -- what does your demographic history look like? I'm guessing a contracting population size moving to the present?

Just so I'm oriented here-- is the y-axis correct? you have Ne going down to 0.1? Are these in relative units?

Okay thanks for the clarification. I'm looking at your code-- it looks like your `-g` flag is pointing to a `.fai` file-- is that a indexed fasta or a bed...