Andrew Chen

Parameters relevant for speed in mutate_mol

11

Hi! Thanks for maintaining this repo! I was wondering which parameters were relevant for speeding up `mutate_mol`? I've found better speeds by increasing `n_cores` but if I wanted to speed...

Batch-Corrected Counts from RPCA with log-normalized counts

1

Similar question to the one raised in [8146](https://github.com/satijalab/seurat/issues/8146) but for log normalized data. But running integration with `IntegrateLayers` as demonstrated in the [vignette](https://satijalab.org/seurat/articles/seurat5_integration), doesn't return a batch-corrected counts layer if...

Adding Seurat's RPCA method to Benchmarking tasks?

3

Hello! I noticed that Seurat's RPCA integration method was not included in either the '[Batch integration embed](https://openproblems.bio/results/batch_integration_embed/)' task or the '[Batch integration feature](https://openproblems.bio/results/batch_integration_feature/)' task. I know that RPCA is capable...

Multiple covariates use case

1

Hello authors of sccomp! Not a bug here, but just wondering what the correct way to specify this regression is. I'm trying to regress cell type abundance (as specified by...