Andrew D Smith

@bshim181 I'm going to close this issue because it seems that your most recent question is a separate issue. Feel free to open a separate issue on that.

Cosing due to inactivity.

@eugeniosss I'm not entirely sure if using `preseq` with enriched data makes sense. Usually for mitochondria (in data sets I see, where mitochondria is undesirable) the coverage of chrM is...

The issue with overwhelming preseq emerges when there is saturation and high coverage. I know preseq has been used successfully with exam data using test runs at lower coverage. This...

The first error tells you that your data exhibits near perfect diversity, and in practice this usually means that the data had been de-duplicated or that your data, in practice,...

I'll consider any pull request.

Sounds like you cloned the repo instead of downloading a release. Can you confirm.

Your specific compiler version has a bug for the regex library. Try anything more recent among gcc compilers.

That's due to a mismatch in the environment likely caused by an incomplete installation or configuration of the new compiler. Are you administering your system? If so, I can probably...

In that case I suggest fully removing all c compilers you are able to, and then reinstalling the one you are using (should be gcc 5.3 or later I think;...