Andrew Slater comments

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                                            Andrew Slater

Logging bug in bmerge

Thanks for looking into this. I thought my data might have some weird edge case but I hadn't noticed the duplicate identifiers in Normed.bim.

Non-adjacent blocks from --compress-reference

Thanks for the quick reply Jonathan. Glad to hear this format is not unexpected for MSAV. I created the M3VCF using this command: ```bash Minimac3 --processReference --refHaps ALL.chr1.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.noSingltons.vcf.gz --prefix ALL.chr1.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.noSingltons...