Andre Sim
Andre Sim
Hi, great to hear this works. Just a few comments first. 4600 reads is very low, we never tested at this limit and I imagine there are very few transcripts...
Hi, sorry for the late reply I was away the last week. I think I have realized the problem. The pca and heatmap methods for plotBambu are only for multi...
Hi, Good news. I was able to get a dataset that produced your original error `'seqlevels(seqinfo(x))' and 'levels(seqnames(x))' are not identical` and was able to track down what was causing...
Hi, Sorry for the delayed response. As you suspect, I do not think this is an issue with the size but rather the alignments on chrI. From the error message...
Hi, We do have this as a beta feature in the read_to_model_map branch. With this version Bambu needs to be run with trackReads = TRUE and will add a metadata(se)$readModelMap...
Hi there, I have updated the BETA read_to_model_map branch to the latest release. Please let me know if you have any success with it.
Sure, you run bambu as normal but add trackReads = TRUE `se
Hi, did you have any luck with getting this to work?
Hi, The ability to track read ID's to the transcript IDs is not yet in the bioconductor version as it is still a beta feature. You need to download the...
Hi Ivan, Glad you were able to get this working. Could you please check for me how many full length reads were assigned to tx.5827 `assays(se)$fullLengthCounts["tx.5827",]` This will help be...