andrawaag

Prevent string matching only in OpenRefine when adding to Wikidata.

6

I am often faced with OpenRefine edits in Wikidata which were clearly caused by string matching only. I know that Open Refine suggests possible semantic types, but it is rather...

dce and dct are merged into the same prefix

1

at line [#L180](https://github.com/multichill/toollabs/blob/master/bot/Europeana/Europeana_uploader.py#L180} and [#181](https://github.com/multichill/toollabs/blob/master/bot/Europeana/Europeana_uploader.py#L180) dce and dct are both merged to dc. This should be done with caution. e.g. [dct:identifier is a refinement of dce:identifier](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/2012-06-14/?v=terms#identifier) An identifier according to...

What is the license of the OBOFoundry metadata?

1

I am parsing https://obofoundry.org/registry/ontologies.jsonld to align with wikidata. It is not clear from the file, which license applies to the individual metadata file. It does list licenses for the individual...

When I test a [schema](https://raw.githubusercontent.com/SuLab/Genewiki-ShEx/master/pathways/wikipathways/ShExJappWP.shex) against a series of URIs (e.g. http://www.wikidata.org/entity/Q30225370) I am getting the following error message `{'focus': rdflib.term.URIRef('http://www.wikidata.org/entity/Q30225370'), 'reason': ' Testing wd:Q30225370 against shape #WD_Pathway\n' ' Datatype...

WDI using pyshex is failing

1

as per https://github.com/SuLab/GeneWikiCentral/issues/110 a recent change in prefilxlib made WDI fail. `py3.6.egg/wikidataintegrator/wdi_core.py", line 16, in File "/var/lib/jenkins/workspace/DO_Robot/venv/local/lib/python3.6/site-packages/PyShEx-0.7.3-py3.6.egg/pyshex/__init__.py", line 1, in File "/var/lib/jenkins/workspace/DO_Robot/venv/local/lib/python3.6/site-packages/PyShEx-0.7.3-py3.6.egg/pyshex/prefixlib.py", line 4, in ModuleNotFoundError: No module named 'pyshexc'`

How to process/generate ShEx reports

2

I am applying ShEx validation on a large scale on Wikidata items, but I am struggling to aggregate the results in a sensible report. I am looking for best practices...

State predicates (and maybe subjects/objects) by their rdfs:label values

3

I am currently trying to write shape expressions on Wikidata, specifically for disease, genes and proteins. Wikidata uses property numbers as predicates. (i.e. wdt:P31 = "instance of", wdt:P279 = "subclass...