ashwin

Would love an update to this!

Yup you have the setup exactly right! The intuition about needing the whole graph for a neighbor-of-neighbor method makes sense... I do wonder if there's some pruning approach where you...

I don't quite understand the question. Have you clustered the cells already and are now applying densVis? If so, the ordering of the output rows will be the same as...

Hi, Great question. Unfortunately in its current iteration, UMAP isn't parametric and thus cannot do out of sample transformation. You currently have to run `fit_transform` on the entire dataset rather...