Ana Stankovic

EPACTS make-kin

8

I am using EPACTS v3.4.2 and I am trying to run Single Variant Test - q.emmax test. I am using the provided test files. I am generating the kinship matrix...

EPACTS single --interval-list

8

Hello, I am having trouble seting the --interval-list parameter for the `epacts single ` function. In the documentation it is defined as "List of intervals as a unit to perform...

EPACTS Zoom Plot

2

I am having problems in running Zoom Plot with the pre-release version 3.4.2. The command line is following: `epacts zoom --pos 20:87662 --prefix _1_20_38_zoomTest --vcf unit_true_1000G_exome_chr20_example_softFiltered.calls.vcf_GRCh38_liftover.vcf.gz` In the attachment is...

EPACTS tool support of GRCh38

11

Hello, I have files run on both GRCh37 and 38 reference and would like to use EPACTS tools to process them. In the post on the EPACTS Google Group (...

DataValidation showDropDown not working

2

I am using pandas and openpyxl to generate a excell sheet. Everything works except: ``` validation = DataValidation( type="list", formula1='"Keep,Delete,Production"', allow_blank=True, showDropDown=True ) ``` Validation to the cells is added,...