Ana Stankovic

Hello, thank you for your response. Per your recommendation, I have installed the pre-release version and run with the 38 reference file. However, in the logs I see that it...

For now I am trying a test run for EPACTS Single Variant Test. This is the command line ```epacts single --vcf true_1000G_exome_chr20_example_softFiltered.calls.vcf_GRCh38_liftover.vcf.gz --ped 1000G_dummy_pheno.ped --test b.score --pheno DISEASE --cov AGE...

Thank you, this solves the problem of the gene anottation. How does the hardcoded part of the EPACTS/scripts/epacts.pm script affect results? As I mentioned, this part of the script is...

Hello, thank you for all the help so far. I am having trouble finding a corresponding version of the Gene Map file (the `genetic_map_GRCh37_wgs.txt.gz` file from the data package) for...

This is amazing, it actually works xD