Amy Glen

_Note: this is **not** urgent since it relates to the KG2c neo4j for KG2.8.0c, which is about to be deprecated_ http://kg2canonicalized2.rtx.ai:7474/browser/ oddly, `kg2canonicalized2.rtx.ai` seems to be refusing neo4j connections (via...

Improve synonymization of Technetium Tc-99m Albumin Aggregated

5

as @edeutsch requested, I traced a couple instances where the local fastNGD database (#729) 'misses' a concept but eUtils doesn't - this is the write-up for one example: NCIT:C87398 (Technetium...

KG2 API swagger /query example doesn't work

1

the example in the swagger documentation for the KG2 `/query` endpoint here: https://arax.ncats.io/beta/api/rtxkg2/v1.2/ui/#/query/query seems to give an `OperationsNotSupported` error this is the query: ``` { "bypass_cache": false, "enforce_edge_directionality": false, "log_level":...

Start following 'best practice' edge merging

1

we should update Expand to adhere to 'best practice' edge merging per the Translator Architecture [guidelines](https://github.com/NCATSTranslator/TranslatorArchitecture): right now ARAX does no edge merging; that is, every edge obtained from every...

Add a way to specify qualifiers in ARAXi

1

Ideally we could build up query graphs in ARAXi that include edge qualifier constraints. I suppose maybe it's a matter of adding `qualified_predicate`, `object_direction_qualifier`, and `object_aspect_qualifier` parameters to `add_qedge()`?

seeing an uncaught error for this query, which doesn't produce any answers (at least with the UI's default timeouts and Expand's default pruning), but nonetheless shouldn't result in an uncaught...

'subclass_of' cycles in KG2c

9

in working on KP reasoning requirement 1) in #1268, I went to build an index for Plover that _recursively_ finds all nodes that are `biolink:subclass_of` a given node in KG2c....

Strange FET behavior: same p-values for every result and missing FET edges

16

I noticed that for this query, every FET edge has the p-value 7.05e-38: https://arax.ncats.io/?r=114179 that seems a little strange, so I just wanted to see if that's expected? also -...

this stems from #1928 from @edeutsch: > I wonder if it is worth putting in a little snippet of code into ARAX that IF SmartAPI yields NOTHING (or perhaps just...

Create a meta KG for ARAX that is a union of its KPs' meta KGs

15

TRAPI 1.3 recommends but does not require that we provide a meta_knowledge_graph for ARAX that is a union of all of its KPs' meta_knowledge_graphs: https://github.com/NCATSTranslator/ReasonerAPI/commit/e2ed87aa4f02dac55dcbd8eac7e190b8c188fbdd maybe this union meta KG...