Alberto Molares Vila

Starting Call Set Refinement (CSR) filtering provokes RAM overload

2

Hi. I'm trying to analyze data from viruses (in illumina paired end fastq format), with a size of 100 MB for the sum of R1 and R2, in a machine...

How to update to the newest WHO mutation catalogue?

2

Hi. Recently, a new mutation catalogue have been released by WHO: https://github.com/GTB-tbsequencing/mutation-catalogue-2023/tree/main/Final%20Result%20Files I wonder if there is an easy way to renew the MTBseq file https://github.com/ngs-fzb/MTBseq_source/blob/master/var/res/MTB_Resistance_Mediating.txt for to incorporating this...

Problem in the detection of amikacin resistances

1

Hi all! I analysed some samples that contain a mutation related with amikacin resitance, checked by other laboratoy techniques, but when I obtain amended results file, this mutation (genomic coordinate...