Ammar Sabir Cheema issues

Repositories
Issues
Comments

Results 2 issues of


                                            Ammar Sabir Cheema

Getting No module named 'nf_core' after successfully building the docker image

Hi There, I successfully built the docker image using the dockerfile given here (https://github.com/nf-core/tools/blob/master/Dockerfile) with slight modifications in the file given below ```dockerfile FROM python:3.8.9-slim LABEL authors="[email protected],[email protected]" \ description="Docker image...

question

Not able to change the pyscenic version to 0.10.4 in the nextflow pipeline --pyscenic_container

Hi, I am trying to use the nextflow implementation of pyscenic using the pipeline given below, **Original Pipeline:** nextflow run aertslab/SCENICprotocol -profile singularity --expr raw_gene_expression_df.csv --output pyscenic_output.csv --TFs allTFs_mm.txt --motifs...