aminards

Results 4 issues of aminards

Not all matches returned using regex_left_join

1 comment

I have two data frames. I need to merge them based on a partial string match. Data frame A has Gene.Name column with EHBP1. Data frame B has Gene.Symbols column...

ktClassifyBLAST seems to be missing some BLAST hits: NZ_ RefSeq prefix not recognized?

I am using Krona 2.7 and have run `updateTaxonomy` and `updateAccession` yesterday. When I run ktClassifyBLAST on my BLAST tabular data that was run using the RefSeq database (downloaded May...

Poretools not finding start times for 1D data

6 comment

I am working with MinION data generated in December 2016. Trying to run poretools times and get the warning message: poretools:No start time for .....fast5! This data was generated with...

RunAzimuth ERROR: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 't': non-conformable arrays

I have 10X multiomics data and have generated a Seurat object. Next I want to run RunAzimuth on my Seurat Object however this fails with the error mentioned in the...

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