Amina Kurbidaeva comments

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                                            Amina Kurbidaeva

awk: cmd. line:1: fatal: division by zero attempted

The contents of the x_query.delta_filter.coords file: ``` NUCMER [S1] [E1] [S2] [E2] [LEN 1] [LEN 2] [% IDY] [LEN R] [LEN Q] [COV R] [COV Q] [FRM] [TAGS] 20704938 20708279...

awk: cmd. line:1: fatal: division by zero attempted

Yes, that makes sense. The x_query.delta file is very small - 288 bytes. It should normally be several Mb for a genome of similar size. I wonder if this is...

HicPlotTADs Hi-C contacts not being plotted

Better, but still not great. Is this because of the missing data? Are there other parameters I can tweak?

Calulate_map_resolution.sh issue

I used an output from pairtools. The input nodups.pairs file is analogous to merged_nodups.txt and contains the following fields: `readID chrom1 pos1 chrom2 pos2 strand1 strand2 pair_type` Can you please...

Calulate_map_resolution.sh issue

Can you please provide the column names in your file?

Cannot view .cool file

Oops. Thanks for clarification. I was trying to compare two balancing methods by viewing two .cool files generated by HiCExplorer and Cooler. Can you recommend how do I view/compare two...