Anna Mankowski

icon company EMBL Heidelberg icon location Heidelberg icon location Postdoc at EMBL Heidelberg. Using metagenomics and bioinformatics to study environmental microbes.

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Problems defining ploidy with bcftools call

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Hello, I am trying to run a combination of bcftools pileup and call, defining --ploidy 1. This however fails. Command: bcftools mpileup -a AD,DP,SP -Ou -f ${ref}.fasta ./${lib}.bam | bcftools...