Alexey Stukalov

Enhance StatsAPI integration

8

One problem that I have run into is that both *SEM* and [*StatsAPI*](https://github.com/JuliaStats/StatsAPI.jl/tree/main) define *params()*, so if the user is using both in the same session (*StatsAPI* e.g. via *Distributions*),...

readQFeatures(): don't ignore colData$quantCols

1

I think the current version has a bug that, if there are no run information, the row names of `colData` are unconditionally assigned to the `sampleNames` (the column names of...

Tolerate "Endpoint is closed" exception thrown by JSONRPC

4

Treat the "Endpoint is closed" exception thrown by JSONRPC as a disconnected exception and don't exit. Fixes #3674. I did not have a chance to test it yet - [...

Support Decimals.jl v0.5

8

This is a version of PR #306 that, in addition to updating the *Decimals.jl* to 0.5, also fixes the decimals-related tests. The details for the test fixes are in the...

colwise!(dist, res, A, B) does not consider eltype(res)

8

Here's a test case (Julia 1.11.2, Distances.jl 0.10.12): ```julia X = reshape(Int16[0, 0], 2, 1) Y = reshape(Int16[1000, 1000], 2, 1) julia> colwise!(SqEuclidean(), Matrix{Float64}(undef, 1, 1), X, Y) 1×1 Matrix{Float64}:...

Enhance savefig()

3

This PR does 2 things: * cleanup `savefig()`: combine docstring from all 3 versions, streamline keyword argument passing using `kwargs...` * add `plotlyjs` and `plotly_version` keyword arguments to `savefig()` to...