eggplant

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The [landmark number of hippo-slide_seq](https://github.com/almaan/eggplant/blob/master/data/mouse-hippocampus/landmarks/hippo-slide_seq.tsv) is different with the landmark number of hippo-visium and reference. I'm wondering if you could check and correct it. landmark of hippo-slide_seq(5 in total): ...

nysun0925

Running the [Full Analysis Example](https://spatial-eggplant.readthedocs.io/en/latest/notebooks/mouse-olfactory-bulb-analysis.html#) on the mouse olfactory bulb datasets leads to diverging sdea results compared to the docs. The signal is too spread out and the regions of...

MobiTobi

The chapter "Data Access" of the documentation describes how to obtain the public data for the Full Analysis Example. Users are instructed to download the zenodo repository, which sadly does...

MobiTobi

Typo pip

simonmfr

czarnewski

Fixes dataset naming issue and iteration counter

1

In "fa_transfer_to_reference()" - The variable 'names' was set to None, to it was crashing unnamed AnnData dictionaries or lists because it took the default name "Model_0" from "transfer_to_reference()", making all...

czarnewski

The 'keep_models' variable raises error when trying to plot selected genes with e.g. `attributes = ['LAMB1','ATCB']`.

czarnewski

Typo?

simonmfr