Nicole Zeltser

vcfR2tidy can't handle files with empty INFO

4

Firstly, thank you for a wonderful package! I, unfortunately, have discovered a bug with an interesting edge-case. I have a VCF that contains no information in the INFO column (`.`...

Hello, I'm not currently experiencing any problems, I'm just curious how the server QC checks/EAGLE/minimac4 handle multiallelic sites, both in the input data and when imputing genotypes. I've tried looking...

Calculating QC Statistics failed.

1

Hello, I am attempting to submit to the TopMed imputation server. The server successfully completes input validation (detects all 23 chromosomes and counts all the SNPs) but fails to complete...