Alex Reynolds

Multivec track shows horizontal crosshair when mouse pointer is not over multivec track

2

Using v1.7.2 of higlass, I have a `horizontal-multivec` track along with a few other non-multivec tracks (gene annotations, `horizontal-point`, and chromosome tracks). When the mouse pointer moves over a non-multivec...

Controlling strand handling wrt input and operations?

1

I discovered some bugs with an interval filtering script that were due to the PyRanges object grouping intervals by strand, which was not immediately obvious from the documentation. This lead...

It might be useful to note that the chromosome name scheme should match what is in the index file associated with the tabix file. Your documentation uses Ensembl's scheme ("1",...

`--real-time-html` results not updated when log is updated

12

**Setup** I have a cron job that updates a summary log once per hour. The summary is made up of a concatenation of two weeks worth of nginx logs and...

Added properties to customize the spinner SVG `id`, title text and `id`, and description text and `id`.

I am using `webpack` v5.89.0 and trying to transpile a modified version of [the `higlass-pileup` project](https://github.com/higlass/higlass-pileup) to use newer `webpack` and `babel` resources, so that it can be processed with...

Running `clodius` version 0.9.4 within a conda virtual environment raised the following error when doing `bedfile-to-multivec` conversion: ``` Traceback (most recent call last): File "/home/areynolds/.conda/envs/clodius/bin/clodius", line 11, in sys.exit(cli()) File...

I set up a higlass-server instance from the develop branch (28 Oct 2021), using the current higlass-docker [Dockerfile](https://github.com/higlass/higlass-docker/blob/master/web-context/Dockerfile.template) as a recipe. I tested a simple ingest of a custom-sized chromsizes...

I'm curious if the slashes in an AWS URL are setting up non-existent paths in the `media` directory. From the `develop` branch: ``` (higlass-server) $ ./test.sh ... (higlass-server) $ python...

'IntervalTree' object has no attribute 'merge_neighbors'

11

I am attempting to call `merge_neighbors()` on an `IntervalTree` instance, but I am running into the following error: ``` % ../test.py IntervalTree([Interval(50, 80, {'chrom': 'chr1', 'id': 'F'}), Interval(100, 120, {'chrom':...