deep-calcium
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alexklibisz
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
Bumps [mistune](https://github.com/lepture/mistune) from 0.7.4 to 2.0.3. Release notes Sourced from mistune's releases. Version 2.0.2 Fix escape_url via lepture/mistune#295 Version 2.0.1 Fix XSS for image link syntax. Version 2.0.0 First release...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 5.2.1 to 6.5.1. Release notes Sourced from nbconvert's releases. Release 6.5.1 No release notes provided. 6.5.0 What's Changed Drop dependency on testpath. by @anntzer in jupyter/nbconvert#1723 Adopt...
Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.3.0 to 3.18.3. Release notes Sourced from protobuf's releases. Protocol Buffers v3.18.3 C++ Reduce memory consumption of MessageSet parsing This release addresses a Security Advisory for C++...
Bumps [tensorflow-gpu](https://github.com/tensorflow/tensorflow) from 1.2.1 to 2.9.3. Release notes Sourced from tensorflow-gpu's releases. TensorFlow 2.9.3 Release 2.9.3 This release introduces several vulnerability fixes: Fixes an overflow in tf.keras.losses.poisson (CVE-2022-41887) Fixes a...
Bumps [pillow](https://github.com/python-pillow/Pillow) from 4.2.1 to 9.3.0. Release notes Sourced from pillow's releases. 9.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/9.3.0.html Changes Initialize libtiff buffer when saving #6699 [@radarhere] Limit SAMPLESPERPIXEL to avoid runtime DOS #6700 [@wiredfool]...
Bumps [certifi](https://github.com/certifi/python-certifi) from 2017.4.17 to 2022.12.7. Commits 9e9e840 2022.12.07 b81bdb2 2022.09.24 939a28f 2022.09.14 aca828a 2022.06.15.2 de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ... b8eb5e9 2022.06.15.1...
Just making a note for future reference that training the UNet2DS model on the GPU with Tensorflow backend results in non-deterministic gradient updates, which results in non-deterministic final results. The...
I was trying to run the example described in the setup instructions: CUDA_VISIBLE_DEVICES="0" python unet2ds_nf.py evaluate neurofinder.00.00 --model unet2ds_model.hdf5 The error is as follows: /home/anaconda3/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: compiletime version 3.5 of...
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Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)