Alex Hübner

I can confirm that installing manually `scikit-learn=0.24.2` solves the problem. Thanks @moritzbuck. However, to work out of the box for installing `anvio` from `bioconda`, the recipe of `anvio-minimal` (https://github.com/bioconda/bioconda-recipes/blob/9f27b72aad38aef18ce4adecd63f3150a31b3b0c/recipes/anvio-minimal/meta.yaml#L28) would...

Dear Francesco, I have a follow-up question to this. I had a similar issue, where the script `phylophlan_setup_database` could only retrieve 1,181 instead of the 3,369 proteins listed for "s__Yersinia_pesits"....

Hi @fasnicar , I finally had a chance to check your latest commit that you mentioned in #98 . It solves the issue for me, too. While still using the...

Which exact version of Python are you using on your system, Francesco? I get different results for different versions of Python 3.6, but of course not the same one as...

OK, when I create a fresh Python 3.6.15 conda repo and install xmlsearch, I can import it without any issues. I only get one at 3.6.0 itself. I will dig...

This removes the additional `c()` wrapped around adding the plot title to the Mainbar plot that breaks the function `upset` when setting the parameter to something else but `NA`.

Yes, I am sorry for not clarifying it more, @d4straub. We have encounter a number of samples for which we have both single-end and paired-end data that belong to the...

Some additional commets to yours, @jfy133: - you are right, `metaSPAdes` does not allow to have only single-end data but at most allows for adding these type of data besides...

While @fgvieira might be true that a proper cluster configuration should take care of this issue, I have faced the same issue @Crispy13. In my case, I had a complex...

That could be one work around, however, I still can't really see a reason why `threads` should not be accessible via `resources`? ;-)