Alexey Gurevich

Inconsistent mapping against full reference and a single chromosome

4

Hi, Heng! We experimented with Drosophila melanogaster genome and found several strange things in minimap2 behaviour (Version: 2.8-r686-dirty). I've attached two our files for reproducing the issues (full chrX extracted...

Report NGA50/NG50 ratio

1

Nice suggestion from @aphillippy: add a new type of metrics measuring the ratio of NGA50 to NG50 (or vice versa; can be also applied to other similar metrics like NAx/Nx).