Alex Müller
Alex Müller
the AA probabilities are pre-computed based on a literature analysis of anticancer peptides. They are dependent on the sequence position and are defined here: https://github.com/alexarnimueller/modlAMP/blob/60039e8a02f55d0797a6f0e25eeb046ff59eaadb/modlamp/core.py#L125C15-L125C15 The publication from which they...
Great to hear you want to update the AA probabilities. This was done by @ggabernet outside of modlamp. Briefly: ACPs were aligned and then for every position up to the...