alexanderwg-ornl

I think I might be running into the same length limitation. I was playing around with forcing dorado to duplex call reads I knew were complementary to each other by...

> Unless the min-qscore option was specified in the cmdline, the only other filter enabled by default is the min sequence length, which is `5`. so even though the pairing...

I see, so it sounds like it is the same problem as the OP: the duplex basecaller is rejecting these shorter alignments. Thanks for your insight!