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                                            alex-trist

empty Snippy output

Same here. No SNP's written in output. Here is my log ### echo snippy 4.6.0 ### cd /home/microseq/Seq_HUMS/VRE3 ### /home/microseq/anaconda3/envs/snippy2/bin/snippy --cpus 22 --cleanup --outdir snippy/349333 --reference Ref_VRE_VanA_ST612.fasta --R1 trimm/349333_R1_trim.fastq.gz --R2...

Error reading header

Hi everyone. Same error here. Any sugestions??

a problem with plascope

Hi! I'm experiencing a similar issue to the one presented by @andrenalina1. All contings returned as unclassified. I'm using plaScope on mode 2, with assembled reads from unicyler v0.5.0. I...