Imaging-transcriptomics

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error in running imt_gsea with geneset except 'lake' and 'pooled'

1

I run imt_gsea in linux command line: ~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g Allen_Brain_Atlas_up -o ~/cyf/IMAGEGENE/AHBA 2024-06-06 18:07:16,803: Performing GSEA. 2024-06-06 18:07:16,814 Input gene rankings contains duplicated IDs, Only use the...

YufeiChenGithub

Spatial correlation in the PLS model

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Hi, First, thanks for developing the Imaging Transcriptomics toolbox—it's been incredibly helpful for my research. I have a quick question about the models of partial least-squares (PLS) regression and mass...

lyhoo23618-csu