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Published 20 hours ago • verified publisher icon alegiac95

error in running imt_gsea with geneset except 'lake' and 'pooled'

Open YufeiChenGithub opened this issue 8 months ago • 1 comments

I run imt_gsea in linux command line:

~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g Allen_Brain_Atlas_up -o ~/cyf/IMAGEGENE/AHBA 2024-06-06 18:07:16,803: Performing GSEA. 2024-06-06 18:07:16,814 Input gene rankings contains duplicated IDs, Only use the duplicated ID with highest value! 已杀死

~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g GO_Biological_Process_2023 -o ~/cyf/IMAGEGENE/AHBA 2024-06-07 15:22:33,474: Performing GSEA. 2024-06-07 15:22:33,572 Input gene rankings contains duplicated IDs, Only use the duplicated ID with highest value! 已杀死

~$ imt_gsea -i ~/cyf/IMAGEGENE/Imt_cth_z_reflect_pls/pls_analysis.pkl -g MSigDB_Computational -o ~/cyf/IMAGEGENE/AHBA 2024-06-07 15:41:39,947: Performing GSEA. 2024-06-07 15:41:40,067 Input gene rankings contains duplicated IDs, Only use the duplicated ID with highest value! 已杀死

YufeiChenGithub avatar Jun 07 '24 09:06 YufeiChenGithub