Alden Dirks

icon indicating a website link aldendirks.com icon indicating an email [email protected]

icon company University of Michigan icon location Ann Arbor, MI icon location Mycologist interested in evolution of early fungal clades; alphataxonomy of corticioid fungi; and fungal biodiversity and conservation in the state of Michigan.

Results 4 issues of Alden Dirks

Properly formatted 'funannotate predict' files do no exist in this directory

3 comment

I don't know if this counts as a bug, but wanted to share that I attempted to update an annotated genome with the NCBI locus tag and SBT file. I...

Final normalized quartet score greater than 1

1 comment

Hello, How do I interpret the fact that ASTRAL is reporting a normalized quarter score greater than 1? Here is some of the output from the log: ``` Using polytree-based...

IQTree ERROR: Numerical underflow (lh-branch

Hello, I am running into an issue with a 47 genomes, 874182 columns dataset. When I attempt to run this pipeline I get an error from IQTree that shuts down...

Error parsing GFF3 file for AvP hgt local score analysis

9 comment

Your software has worked really well for me! I'm now trying to run the HGT local score script but am getting errors parsing the GFF3 file. ``` Traceback (most recent...