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                                            Alberto Santos

Cannot find the mapped_code column in the compound file from FooDB

Hi, FooDB (https://foodb.ca/) has changed the format in which they provide the data. We would need to modify the parser to adapt to these changes. 🐛 in FooDB parser.

[docker build] what to expect - neo4j browser?

Hi, The CKG app only runs if the database is running (first step in the docker_entrypoint) so it should be accessible at localhost:7474 and you should see something like the...

Neo4j and graph problems

Hi, 1. If I understand correctly, the graph is built correctly and the connection to the database works but when you access Neo4j desktop, you cannot see any nodes. The...

Missing drug-protein relations

Dear Victorconan, Sorry for the late response. CKG uses identifiers from DrugBank for Drug nodes and in order to map relationships extracted from STITCH database we use the provided alias...