Xiao Lin

I am also having the same issue. Is there a solution yet?

Thanks for pointing to the WLegendV function. I tried it with visualizeGene() but it showed the "Error in objs[[1]] : subscript out of bounds" message. Do you think it has...

Yes, this example works fine. I noticed that there were some probes with NAs and I thought thoese might be an issue. So I removed probes with NA, however, the...

I would also suspect so. Below is what the heatmap looks like after removing the NAs. Yet, the "subscript out of bound" error persisted. 

I extracted the beta values of 16 probes associated with the FMR1 gene as shown in this table. I tried to use this matrix as input for visualizeGene() and WLegendV()...

It works now. I guess the trick is in the data type of betas/b2. Thanks Wanding for your help. Just a note here. It worked for me if I first...

Hi @rj-patrick, I can see the output being generated by CountPeaks and they can be used for downstream analyses. It is just the error message that I am not sure...

Hi @nick-youngblut @cying111. Is there any update on this issue? I tried several versions of xgboost, including 1.3.1.1, 1.3.2.1 and 1.7.8.1, with the latest bambu version, but the error of...