Alan Cleary

Results 49 comments of Alan Cleary

Hey there. Sorry for the long delay on this. I went through and ported the whole client and auto_complete classes into aio code but then got hung up on how...

@chayim Here's a commit that adds an AioClient class (with AioBatchIndexer) and an AioAutoCompleter class: https://github.com/alancleary/redisearch-py/commit/ed3da46bc2a17b9060d0480c12954bec270b3d50. These are the only classes that needed to be ported because they're the only...

Hey there. I just wanted to bump this thread. Since I've received no response here or on Stack Overflow, I presume this functionality is not implemented. I'm willing to make...

Thanks @MiWeiss. Believe it or not this issue is still relevant for me so I appreciate you following up.

As @pushrax mentioned, the `{% if hash contains "key" %}` solution doesn't work on drops, including the global `site` variable in Jekyll. So if you want to check if a...

I'd also like to add my support for longer/custom target sequences. @aaronmck, is there an ETA on version 2?

Thanks for the quick reply, @adamnovak. I installed toil-vg via pip. Looking at the package on PyPi, it apparently hasn't been updated since Nov 3, 2018. I was using the...

@adf-ncgr I'm sure you've seen this but I just noticed a very nice example of the inversion algorithm doing a great job: https://legumeinfo.org/gcv2/gene;lis=phavu.Phvul.002G100400?q=Phvul.002G100400&sources=lis&algorithm=repeat&match=10&mismatch=-1&gap=-1&score=30&threshold=25&bmatched=20&bintermediate=10&bmask=10&linkage=average&cthreshold=20&neighbors=10&matched=4&intermediate=5&bregexp=&border=chromosome&regexp=medsa.chr4.4&order=distance

Well shoot. I think you're right; it's just a segmental duplication. I may need to start taking gene orientation into account again when aligning. That would probably make these false...

> my guess is that the middle copy in the dotplot is getting hidden in the alignment for some technical reason but I could certainly be wrong! Oh, I see....