akmorrow13

Hi @antonkulaga ! What version is your SPARK_HOME pointing to? Are you just trying to run this locally?

@antonkulaga locally you should be able to run the following: ./scripts/move_to_scala_2.11.sh ./scripts/move_to_spark_2.sh mvn clean package -DskipTests ./example-files/run-example.sh And see the results at localhost:8080 This should be able to run with...

Can you right click and see if there is a javascript console error? Also, when did you last build? There was a recent[ bug fix ](https://github.com/bigdatagenomics/mango/pull/450) that may be related.

Oh, my apologies. There is data (see the coverage track). To view reads, click on the settings wheel to "Show Alignments". By default, Mango only shows coverage. I can change...

There is a driver cache and a spark RDD cache. When the data is in the driver cache, it just grabs data through there. When the data is not on...

@ssabnis it looks like your reference does not match your sample. Maybe you're sample is aligned to hg19, instead of hg38. The top track is showing you coverage of the...

A vcf file can be any variant file you choose to view. Some example files can be found at http://www.internationalgenome.org/data/ and are free to download and play around with. You...

Hi @benwbooth, thanks for the catch! This looks like it is a bug in ADAM FastaConverter, not Mango. Can you make an issue there so we can track it? In...

We could factor these out for many of the structures right away, - using record group name or sample. Features - some combination of feature types (not sure about this)...

Unfortunately right now, the only supported protocol for -genes is http. Supporting local bed/bigbed files through a JSON API requires modifying [pileup.js GeneTrack code](https://github.com/hammerlab/pileup.js/blob/master/src/main/viz/GeneTrack.js) to support JSON formats. I have...