Apoorva Kelkar

ANTsRegistration not registering the T1w to b=0 image correctly

11

**Describe the problem** I am using AntsRegistrationSyn to register the T1w to the b=0 DWI image. However it fails for 2 subjects and runs for 30 others. The output T1wtob0Warped.nii.gz...

Hi, 5ttgen gives an error when I run qsiprep 0.13.0RC1 on my data. It runs for all other subjects but errors on this one. Here is my command: `screen docker...

QSIPrep does distortion correction with different PE directions?

2

Hi, I am opening this issue to confirm qsiprep does distortion correction correctly on my data. I have two datasets I am working with Dataset 1: patient data (stroke) where...

Hi, I processed connectomes through the qsiprep 0.13.0RC1 probabilistic pipeline. However, on opening the results, I see some discrepancies in the connectome. 1. radius2_count is double for each subject 2....

Error in brain segmentation

2

Hi Dorian, I hope you are doing well. I am using LINDA on R version 4.3.2. I installed ANTsR and ANTsRCore and ITK and LINDA. On running LINDA (v 0.5.1),...

Hi, I am trying to run easy_lasuanne on Freesurfer v6. I have installed it on Python 2.7.18. When the command runs it gives a bad CPU executable error as tkregister2...