Allan Ferrari

icon indicating an email [email protected]

icon company Northwestern University icon location Chicago, IL icon location High throughput HDX-MS to investigate protein energy landscapes

Results 3 issues of Allan Ferrari

Provide requirements list

Hi, I am trying to run a protocol inspired by the example20_protein_demo.ipynb for a few backbones. I followed the instructions provided in installation but not all requirements are readily available....

mmseqs map and filterdb do not generate header file (*_h)

2 comment

I want to extract the list of 20 best sequences that match a target sequence to later generate a Multiple Sequence Alignment (MSA) file. I am running: `mmseqs map queryDB...

_cdist_backward requires X2 to be contiguous

1 comment

Hi - I am trying to build some structural elements around a scaffold (1wj2.pdb, A430-466). Currently, I've been playing around with some options, but I am getting a random error...