ajr82

Thank you for your reply. It is not the QuPath standard. I am using the NoCodeSeg scripts and therefore it makes it easy. I thought that we could maybe specify...

> @ajr82 You are probably referring to importing the segmentation TIFF to QuPath using this script, right? https://github.com/andreped/NoCodeSeg/blob/main/source/importPyramidalTIFF.groovy > > If I remember correctly, I have updated this script locally,...

@andreped thank you for looking into this. Like you mentioned, I noticed that some of the WSIs have a mhd/raw output, while others have a .tiff output. I was wondering...

@andreped I have been using both the tile-based and full WSI annotation methods to import into QuPath from MIB. Both methods work well. I do notice subtle changes in the...

Thank you very much!

Thank you very much!

@andreped @smistad thank you for the information. We have been using FAST-Pathology+NoCodeSeg+QuPath (and MIB for training). No more tiling or jpeg of WSIs with FAST-Pathology and this has improved our...