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AIRR Community Data Standards
Starting to think about this in the context of generating a lot of 10x VDJ data... it seems we will want to (eventually) have a way for `Clone`s to contain...
Closely related to #201, obviously, but I'm actually more thinking about #317 and efforts to simplify the `Clone` schema. For #201, all `Rearrangement`s/`Cell`s in a `Repertoire` would be nonphysical, which...
- [ ] Currently, the PR check converts the v2 schema into v3 then compares with jsondiff. Swap this so v2 is generated from the v3 schema. - [ ]...
reference libraries do not provide access to CURIEMap and InformationProvider for CURIE resolution
The singleton objects `CURIEMap ` and `InformationProvider` are not obviously accessible to external tools. To use them in order to resolve CURIEs would require access and parsing of the schema...
This came up in a side discussions [here](https://github.com/airr-community/airr-standards/issues/246#issuecomment-587962477) and [here](https://github.com/airr-community/airr-standards/issues/320#issuecomment-586014470). Creating a separate issue as those other issues are becoming overloaded with multiple topics. The `id` fields we are defining...
Ideally, I would be able to do this with a simple dictionary like { 'columnX':int, 'columnY':boolean }, but I could settle for passing in a full auxiliary schema if that's...
At least in the 10x case, getting VDJ is often accompanied by gene expression data. As we are defining a format for the processed GEX data #409 , should we...
@bcorrie Any reason to keep the OpenAPI 2 spec now that we have the OpenAPI 3 spec? We aren't doing any consistency checking between the two so who knows if...
Both Genotype and MHCGenotype are nested more deeply than typical for the schema. `MHCGenotype.mhc_alleles` and and `Genotype.*_alleles` could be pulled out into top level objects with refs in Genotype and...
