Juicebox
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aidenlab
Visualization and analysis software for Hi-C data -
@dudcha @musianat @ranganmostofa so that it does not fall out of style with the other assembly cursors on various machines
@dudcha Make a right-click menu item to do ungroup all/regroup all in selection. Should act like bald: first do all in one group, then ungroup all.
@ranganmostofa @dudcha @musianat Assembly menu looks like bulleted list on some computers: check style and look for other weird appearance issues.
@musianat @dudcha Help user by showing a message to the user that assembly contains small annotations that require zooming in to be seen or something to that effect. Maybe do...
@musianat Possibly just reducing the things that are kept as part of the AssemblyScaffoldHandler would be enough. Low priority and probably reducing AssemblyScaffoldHandler should be prioritized over plain limit steps.
@ranganmostofa Concerns at least two children: thumbnail image and mini-annotation panel
From the Data Extraction examples it appears that specifying an argument for chr is optional for "dump norm" and that without it should default to All Chromosomes without an argument...
Incidentally, when I run jbox it appears big, but not quite maximized on the screen. dunno if that is intentional. would be nice to maximize if that is easy but...
Ideally this would just be the same as the one used by Juicebox.js. Regardless it needs to be updated so that the two are consistent.
There should be the same check as in HiCCUPS for HiCCUPSDiff - one user reported no feedback at all and wasn't using GPUs.