Juicebox
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aidenlab
Visualization and analysis software for Hi-C data -
When two .hic files are opened and viewed as "observed vs control" they completely shift out of place. See the attachment for an example. One is Micro-C aligned with ENZYME=none...
Initially, I just wanted to start using Juicebox to curate my first primary assembly created with the 3dDNA pipeline. However, with `juicebox_2.16.00.jar`, the latest build that I could download from...
Since the UCSC genome browser only supports version 6-8 hic format (https://urldefense.com/v3/__https://genome.ucsc.edu/goldenPath/help/hic.html__;!!GX6Nv3_Pjr8b-17qtCok029Ok438DqXQ!2dbfZo-clrBUa7wOaEaB8wutfJ3mL8xjx7A7ZzusiFkAR_VP0d1nU2MT_habomngZiutxkndgF7mm-3T$), is there any way to create a version 8 hic file using pre?
**Describe the bug** Our genome size is ~4Gb and the scale factor is 2. When I load the .hic file, the default scale factor is set to 3. Next, I...
Hello Juicebox Team, I am experiencing an issue with Juicebox on Windows where I am unable to open or select any folders outside of the C:\Documents directory. Whenever I attempt...
Dear Aiden lab I am trying to get the most recent version of juicebox and juicertools for linux, i.e. the most recent jars. Looking at the [https://github.com/aidenlab/Juicebox/wiki/Download](download wiki page) of...
I recently updated my (very old) mac computer and am subsequently using a much newer version of Juicebox. In the old version I used, there was a right click function...
