Aida Andrades Valtueña

Closes https://github.com/ewels/MultiQC/issues/1683 - [x] This comment contains a description of changes (with reason) - [x] `CHANGELOG.md` has been updated

### Description of bug When running multiQC within the nf-core/eager pipeline, the malt module crashes because one of the samples that I am analysing has 0 reads (ZWI001.A0101.MT1). ### File...

## PR checklist Added the module for endorspy Closes #855 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added...

Fixed TSV input documentation

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Removed the second fastq in the SE data in the example of the TSV input, since this should be NA for single-end data ## PR checklist - [x] This comment...

Added Sun 2024

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# Pull Request This PR is for a - [x] [New Publication(s)](#new-publication) - [ ] [Correction](#correction) For the following list(s): - [ ] ancientmetagenome-environmental ([README](https://github.com/SPAAM-workshop/AncientMetagenomeDir/tree/master/ancientmetagenome-environmental)) - [ ] ancientmetagenome-hostassociated ([README](https://github.com/SPAAM-workshop/AncientMetagenomeDir/tree/master/ancientmetagenome-hostassociated))...

### Publication DOI or URL https://www.science.org/doi/10.1126/science.adg2238 ### Additional context _No response_

SPADES changed flag for single-read in illumina reads

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## PR checklist Changed flag for single-read illumina reads to --s, since -s is used in spades for singletons from a pair-end library (see Input data in https://github.com/ablab/spades/blob/spades_3.15.5/README.md) - [x]...

Adding MultiVCFAnalyzer

### Publication DOI or URL https://www.nature.com/articles/s41586-024-07651-2 ### Additional context accession number PRJEB76142

Added Fiddaman 2023 sample table

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# Pull Request This PR is for a - [x] [New Publication(s)](#new-publication) - [ ] [Correction](#correction) For the following list(s): - [ ] ancientmetagenome-environmental ([README](https://github.com/SPAAM-workshop/AncientMetagenomeDir/tree/master/ancientmetagenome-environmental)) - [ ] ancientmetagenome-hostassociated ([README](https://github.com/SPAAM-workshop/AncientMetagenomeDir/tree/master/ancientmetagenome-hostassociated))...